Insertion junction: CLIP2.019876_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.019876
Chromosome:chromosome 11
Location:1756985
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre11.g468050 VIPP2 (1 of 2) K03969 - phage shock protein A (pspA); Vesicle inducing protein in plastids 2 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGTCACGGAGTCAAATCAAACGAGCCTCAGTCTTTCCGTTTCGGCCCGC
Internal bar code:AACCCTAAACGCGATTGTAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:369
LEAP-Seq percent confirming:71.4286
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:AGGGCACACACACTATGACG
Suggested primer 2:GGAGCATGCAGATACCGTGA