Insertion junction: CLIP2.019899_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.019899
Chromosome:chromosome 17
Location:1385687
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g706050 SRR17 (1 of 1) IPR001190//IPR005515//IPR017448 - SRCR domain // Vitelline membrane outer layer protein I (VOMI) // SRCR-like domain; Possible cell surface glycoprotein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCACCATACAAGCAAAGCAGCACAGTAAGCACACGCAGCAGGTCATAAA
Internal bar code:CCCTAAGCCGTGAGGCTTTGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:5523
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:153
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:162

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCGTGGATGTTTGTGCTT
Suggested primer 2:GTTGACCATGCACCTCTCCA