Insertion junction: CLIP2.020008_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.020008
Chromosome:chromosome 5
Location:2951731
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre24.g755347 MUT6 Transgene and transposon silencing 6; (1 of 1) K12815 - pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 (DHX38, PRP16) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGTGTTACGTGTGTGTGTGTGTAAAACGACATATCGGCTTGTCAAATG
Internal bar code:GGGACGAGGAGGTCCCTACCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:61
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGTGGGAGTGAGAGTGG
Suggested primer 2:GAACCGAACCGAACGCAAAA