| Common name: | MUT6 |
| Defline: | Transgene and transposon silencing 6; (1 of 1) K12815 - pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 (DHX38, PRP16) |
| Description: | A DEAH-box RNA helicase that is responsible for transgene silencing; Identified by insertional mutagenesis at this locus in the mut6 strain; This protein is necessary for the degradation of certain aberrant RNAs, such as improperly processed transcripts, which are often produced by transposons and some transgenes |
| Synonyms: | g18255.t1,Cre05.g230550.t1.1,Cre05.g230550.t1.2 |
| Chromosome: | chromosome 5 (genome version v6.1), scaffold 24 (genome version v5.5) |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.008109_1 | CLIP2.008109 | intron | 80 | 6.1 |
| CLIP2.008109_2 | CLIP2.008109 | intron | 80 | 6.1 |
| CLIP2.013922_3 | CLIP2.013922 | intron | 80 | 6.1 |
| CLIP2.013922_4 | CLIP2.013922 | intron | 80 | 6.1 |
| CLIP2.020008_1 | CLIP2.020008 | intron | 80 | 6.1 |
| CLIP2.020008_2 | CLIP2.020008 | intron | 80 | 6.1 |
| CLIP2.041442_1 | CLIP2.041442 | intron | 80 | 6.1 |
| CLIP2.041442_2 | CLIP2.041442 | intron | 80 | 6.1 |
| CLIP2.051570_1 | CLIP2.051570 | intron | 80 | 6.1 |
| CLIP2.051570_2 | CLIP2.051570 | intron | 80 | 6.1 |
| CLIP2.058498_2 | CLIP2.058498 | intron | 63 | 6.1 |
| LMJ.RY0402.095418_2 | LMJ.RY0402.095418 | intron | 58 | 5.5 |
| LMJ.RY0402.096097_1 | LMJ.RY0402.096097 | intron | 58 | 5.5 |
| PFAM: | PF00270, PF00271, PF04408, PF07717 |
| PANTHER: | PTHR18934 PTHR18934:SF91 |
| KEGG_ec: | EC:3.6.4.13 |
| KEGG_orthology: | K12815 |
| KOG: | KOG0924 |
| Gene ontology terms:: | GO:0003676, GO:0004386, GO:0005524 |
| Best arabidopsis TAIR name: | AT5G13010 |
| Best arabidopsis TAIR symbol: | EMB3011 |
| Best arabidopsis TAIR defline: | RNA helicase family protein |
| Phytozome Locus Page |
Our phenotype screens did not find statistically significant results for this gene.