Insertion junction: CLIP2.051570_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.051570
Chromosome:chromosome 5
Location:2943678
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre24.g755347 MUT6 Transgene and transposon silencing 6; (1 of 1) K12815 - pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 (DHX38, PRP16) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCCCAACAGTCAAGGCAGGGGGTGGGGAGGAGGCAGGGAGAGTGTGGGT
Internal bar code:GGGGTTTCCGCATTGACATGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:207
LEAP-Seq percent confirming:76.9231
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGTTTGAGATCCTCGCAA
Suggested primer 2:CTTGCTCCTTGTTGTGCCAC