Insertion junction: CLIP2.021120_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.021120
Chromosome:chromosome 16
Location:3302095
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g666334 RFS1 (1 of 1) 2.4.1.82 - Galactinol--sucrose galactosyltransferase / Raffinose synthase; putative raffinose synthase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCACCTCGTCTGTGGCACCTGGACAGAATTGCAGCAGCAAGTAATGCAA
Internal bar code:AGCTATAGGAGATGTGAATGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3046
LEAP-Seq percent confirming:94.9495
LEAP-Seq n confirming:94
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:99

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGCACTCTTTATGGCTGA
Suggested primer 2:CCACGGTCAGATGGATAGCC