Insertion junction: CLIP2.022348_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.022348
Chromosome:chromosome 5
Location:1868253
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g235750 MSH6 DNA mismatch repair protein, MutS homolog; (1 of 1) K08737 - DNA mismatch repair protein MSH6 (MSH6) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGCTCTTTAACACACACACACACACACACACACGCACACACACACACA
Internal bar code:CTGATTATCATTTTCGCCGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2843
LEAP-Seq percent confirming:64.2857
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:GCACGCTGCAGTTCTTTGAA
Suggested primer 2:GTATGTAGTTGGGCGGGCTT