Insertion junction: CLIP2.022348_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.022348
Chromosome:chromosome 5
Location:1869384
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g235750 MSH6 DNA mismatch repair protein, MutS homolog; (1 of 1) K08737 - DNA mismatch repair protein MSH6 (MSH6) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGATTCTCTTGCTTAGGAAGGGGGACAATGTCGCTACCGTAATGTGCGTA
Internal bar code:CTGATTATCATTTTCGCCGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:756
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GTATGTAGTTGGGCGGGCTT
Suggested primer 2:GCACGCTGCAGTTCTTTGAA