Insertion junction: CLIP2.022513_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.022513
Chromosome:chromosome 3
Location:6457549
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g193400 (1 of 2) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCCAGATCCAGATCTCCCACGCCCCGGATCAGATTCGGCGGCACCTCTT
Internal bar code:TTTTGACAGTCTAAGTTAGTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2345
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGTAGTGGTGTTTCGGCA
Suggested primer 2:TTCTGCTGCACTACACCAGG