Insertion junction: CLIP2.024603_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.024603
Chromosome:chromosome 11
Location:1046398
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467665 (1 of 1) IPR002909//IPR006626//IPR011050//IPR014756//IPR019316 - IPT domain // Parallel beta-helix repeat // Pectin lyase fold/virulence factor // Immunoglobulin E-set // G8 domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGTGAGGTTCAGTGCCAGCAGCGCGTCGTTGAACCGCGCCGCGCTGTC
Internal bar code:GATCTTCAACAAGTTGGACGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:4885
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:TAGGGAGGTTGGGATGGAGG
Suggested primer 2:GCTGGTGAGGTCGTTGATGA