Insertion junction: CLIP2.027458_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.027458
Chromosome:chromosome 13
Location:1297197
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g571050 High mobility group protein; (1 of 1) PF00505//PF01388 - HMG (high mobility group) box (HMG_box) // ARID/BRIGHT DNA binding domain (ARID) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCAGCTGGCGCCGCATCTGCTGCGATACGCGTGTAGGCGGCAGCGCGGGC
Internal bar code:TGTTTAAATACGCTATTGGTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:4889
LEAP-Seq percent confirming:38.4615
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCGCAACAGCAGCAAATA
Suggested primer 2:TTGCCGTTGCGTATATTGCG