Insertion junction: CLIP2.027909_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.027909
Chromosome:chromosome 13
Location:1492984
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g572500 COA2,CGL14 (1 of 1) PTHR12280//PTHR12280:SF31 - PANTOTHENATE KINASE // SUBFAMILY NOT NAMED; Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGAGGAGGCCGTGGCGGCCACGGCGGACTGCGACCTGATCGTCCTCGAGG
Internal bar code:TTTTCCACACGTAGTGCATAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1075
LEAP-Seq percent confirming:76.9231
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:TTCGAAACGTCTTCTCGCCA
Suggested primer 2:TCTCGCGCTCGTACTCATTC