Insertion junction: CLIP2.029039_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.029039
Chromosome:chromosome 12
Location:9210751
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g542950 CGL137,NUP54 Nucleoporin 54; (1 of 1) K14308 - nuclear pore complex protein Nup54 (NUP54, NUP57) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGGGGACGGAGCTTGGTGGTAGGCCGTGGTGGAGGGAGTAAGGGCACG
Internal bar code:ATAACAATTACTGTGGGTAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:827
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGTTGTATGACATGCGCG
Suggested primer 2:TTACGCTGAGTGGGGCATTT