Insertion junction: CLIP2.030405_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.030405
Chromosome:chromosome 13
Location:2259257
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g578501 (1 of 1) IPR009060//IPR015940//IPR026741//IPR026937//IPR027417 - UBA-like // Ubiquitin-associated domain // Protein strawberry notch // Strawberry notch, helicase C domain // P-loop containing nucleoside triphosphate hydrolase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTGTTGAGCCGTGTTCGATGTCCTAGCAAACGAACGGAGCAAAACGCA
Internal bar code:GTGGGACCATTTTTACTTCAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:422
LEAP-Seq percent confirming:18.75
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGTTCCTGACAACTTCGA
Suggested primer 2:AACCACACACAGGCGATGAT