Insertion junction: CLIP2.031454_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.031454
Chromosome:chromosome 7
Location:2116549
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g326450 VPS5B (1 of 2) K17917 - sorting nexin-1/2 (SNX1_2); Subunit of Retromer complex intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGTCATGCGGTGATGTTGAGGGCCCTCAAGTAGCGCGTGAGAGAATGCA
Internal bar code:ACTTTTAATTACAAATAGATTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2145
LEAP-Seq percent confirming:97.9167
LEAP-Seq n confirming:47
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGTGCACCATTATTCGCG
Suggested primer 2:ATGATGTAGCCGCGGTAGTG