Gene: Cre07.g326450

Overview

Common name:	VPS5B
Defline:	(1 of 2) K17917 - sorting nexin-1/2 (SNX1_2); Subunit of Retromer complex
Description:	Hypothetical Conserved Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking.
Synonyms:	VPS5B,g7591.t1
Chromosome:	chromosome 7

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.001076_1	CLIP2.001076	3'UTR	80	6.1
CLIP2.001076_2	CLIP2.001076	3'UTR	80	6.1
CLIP2.019596_1	CLIP2.019596	CDS	80	6.1
CLIP2.019596_2	CLIP2.019596	CDS	80	6.1
CLIP2.026833_1	CLIP2.026833	intron	80	6.1
CLIP2.028648_1	CLIP2.028648	CDS	80	6.1
CLIP2.028648_2	CLIP2.028648	CDS	80	6.1
CLIP2.029764_1	CLIP2.029764	CDS	80	6.1
CLIP2.029764_2	CLIP2.029764	CDS	80	6.1
CLIP2.030837_1	CLIP2.030837	CDS	80	6.1
CLIP2.030837_2	CLIP2.030837	CDS	80	6.1
CLIP2.031454_1	CLIP2.031454	intron	80	6.1
CLIP2.031454_2	CLIP2.031454	intron	80	6.1
CLIP2.042761_1	CLIP2.042761	CDS	80	6.1
CLIP2.068262_4	CLIP2.068262	3'UTR	80	6.1
CLIP2.078948_1	CLIP2.078948	CDS	80	6.1
LMJ.RY0402.053564_1	LMJ.RY0402.053564	intron	73	5.5
LMJ.RY0402.057196_1	LMJ.RY0402.057196	5'UTR	73	5.5
LMJ.RY0402.083629_1	LMJ.RY0402.083629	intron	58	5.5
LMJ.RY0402.096849_1	LMJ.RY0402.096849	intron	95	5.5
LMJ.RY0402.096849_2	LMJ.RY0402.096849	intron	95	5.5
LMJ.RY0402.130915_1	LMJ.RY0402.130915	3'UTR	73	5.5
LMJ.RY0402.143112_1	LMJ.RY0402.143112	3'UTR	95	5.5
LMJ.RY0402.143112_2	LMJ.RY0402.143112	3'UTR	95	5.5
LMJ.RY0402.145515_1	LMJ.RY0402.145515	intron	95	5.5
LMJ.RY0402.145515_2	LMJ.RY0402.145515	intron	95	5.5
LMJ.RY0402.145515_3	LMJ.RY0402.145515	intron	95	5.5
LMJ.RY0402.161958_1	LMJ.RY0402.161958	5'UTR	73	5.5
LMJ.RY0402.177623_1	LMJ.RY0402.177623	3'UTR	95	5.5
LMJ.RY0402.186386_1	LMJ.RY0402.186386	intron	95	5.5
LMJ.RY0402.186386_2	LMJ.RY0402.186386	3'UTR	95	5.5
LMJ.RY0402.205352_1	LMJ.RY0402.205352	intron	58	5.5
LMJ.RY0402.214132_1	LMJ.RY0402.214132	3'UTR	95	5.5
LMJ.RY0402.214132_2	LMJ.RY0402.214132	3'UTR	95	5.5
LMJ.RY0402.235033_1	LMJ.RY0402.235033	CDS	95	5.5
LMJ.RY0402.235033_2	LMJ.RY0402.235033	CDS	95	5.5
LMJ.RY0402.247882_1	LMJ.RY0402.247882	3'UTR	73	5.5
LMJ.RY0402.251179_1	LMJ.RY0402.251179	intron	73	5.5

Gene Annotations

PFAM:	PF00787, PF09325
PANTHER:	PTHR10555 PTHR10555:SF84
KEGG_ec:
KEGG_orthology:	K17917
KOG:	KOG2273
Gene ontology terms::	GO:0035091
Best arabidopsis TAIR name:	AT5G07120.1
Best arabidopsis TAIR symbol:	SNX2b
Best arabidopsis TAIR defline:	sorting nexin 2B
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.