Insertion junction: CLIP2.031733_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.031733
Chromosome:chromosome 5
Location:1875461
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g235750 MSH6 DNA mismatch repair protein, MutS homolog; (1 of 1) K08737 - DNA mismatch repair protein MSH6 (MSH6) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCATTTAACCACTGACCTCCCCCCCTGTCACACCCACACACCCCACTGT
Internal bar code:GTGCGCGAATTACTTGGGAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1135
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:AGGTAGGGAGGAGAGGAGGA
Suggested primer 2:GCATCTCGCTTGCATTCCTG