Insertion junction: CLIP2.032197_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.032197
Chromosome:chromosome 2
Location:6433314
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g388400 RAT1 (1 of 1) PF07798 - Protein of unknown function (DUF1640) (DUF1640); Chloroplast tscA maturation factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGATGTGCTGTGAGGGCTGTGCGAGATGGGGCTAAGTGTGCATGTGTATT
Internal bar code:GATTGTGTTAAGCCTCTTGTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:814
LEAP-Seq percent confirming:36.1111
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:TGCAGGTCCGTGTACTTGTC
Suggested primer 2:TGCCTCCTCTCCATAGTGCT