Gene: Cre09.g388400
Overview
| Common name: | RAT1 |
| Defline: | (1 of 1) PF07798 - Protein of unknown function (DUF1640) (DUF1640); Chloroplast tscA maturation factor |
| Description: | thylakoid membrane protein necessary for 3' end maturation of tscA mRNA, hence for psaA trans-splicing of exons 1 and 2 (PMID: 16115062); has homologues of unknown function in a broad range of organisms; reported similarity to NAD+ binding domain of PARP is dubious |
| Synonyms: | g9532.t1,RAT1,Cre09.g388400.t1.1 |
| Chromosome: | chromosome 2 (genome version v6.1), chromosome 9 (genome version v5.5) |
Protein Localization
A plasmid for expressing Cre09.g388400 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre09.g388400-Venus-3xFLAG
Imaged strain: CSI_LW12A2
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
mitochondria
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.003204_1 | CLIP2.003204 | 3'UTR | 80 | 6.1 |
| CLIP2.003204_2 | CLIP2.003204 | 3'UTR | 80 | 6.1 |
| CLIP2.022672_1 | CLIP2.022672 | CDS | 80 | 6.1 |
| CLIP2.022672_2 | CLIP2.022672 | CDS | 80 | 6.1 |
| CLIP2.023802_1 | CLIP2.023802 | CDS | 80 | 6.1 |
| CLIP2.023802_2 | CLIP2.023802 | CDS | 80 | 6.1 |
| CLIP2.032057_1 | CLIP2.032057 | intron | 80 | 6.1 |
| CLIP2.032057_2 | CLIP2.032057 | intron | 80 | 6.1 |
| CLIP2.032197_1 | CLIP2.032197 | intron | 80 | 6.1 |
| CLIP2.032197_2 | CLIP2.032197 | intron | 80 | 6.1 |
| CLIP2.044632_1 | CLIP2.044632 | CDS | 80 | 6.1 |
| CLIP2.044632_2 | CLIP2.044632 | CDS | 80 | 6.1 |
| CLIP2.065843_1 | CLIP2.065843 | 3'UTR | 80 | 6.1 |
| CLIP2.065843_2 | CLIP2.065843 | 3'UTR | 80 | 6.1 |
| CLIP2.071680_1 | CLIP2.071680 | 3'UTR | 80 | 6.1 |
| CLIP2.071680_2 | CLIP2.071680 | 3'UTR | 80 | 6.1 |
| CLIP2.071972_1 | CLIP2.071972 | 3'UTR | 80 | 6.1 |
| CLIP2.078542_1 | CLIP2.078542 | 3'UTR | 80 | 6.1 |
| CLIP2.078542_2 | CLIP2.078542 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.237909_2 | LMJ.RY0402.237909 | 3'UTR | 58 | 5.5 |
Gene Annotations
| PFAM: | PF07798 |
| PANTHER: | PTHR14360 PTHR14360:SF1 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | KOG3156 |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT2G16460 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | Protein of unknown function (DUF1640) |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.