Insertion junction: LMJ.RY0402.237909_2

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.237909
Chromosome:chromosome 9
Location:2878247
Confidence (%):58
Locus systematic id Locus common name Defline Feature
Cre09.g388400 RAT1 (1 of 1) PF07798 - Protein of unknown function (DUF1640) (DUF1640); Chloroplast tscA maturation factor 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGGTCCAGCGGAGGTATCATACCGTACA
Internal bar code:GGAGGGGGAAGTGAGGTGAAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:521
LEAP-Seq percent confirming:99.4565
LEAP-Seq n confirming:183
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGCGGTTGTATCATCCCT
Suggested primer 2:AGTCGGTCATCACCATCCTC