Insertion junction: CLIP2.035761_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.035761
Chromosome:chromosome 3
Location:4917220
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g178900 PRD1 (1 of 43) IPR011989 - Armadillo-like helical; putative meiotic recombination protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAAGAGCCGACGGCGAAGCCGCCGCCGCCGCCGCCACCGTGTACGGTGC
Internal bar code:TATGGCTGGCATGTGTCGTATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1562
LEAP-Seq percent confirming:81.25
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGCAGTTTCACGTGTTGG
Suggested primer 2:TGGCCTATGCTATCATGCGG