Insertion junction: CLIP2.035865_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.035865
Chromosome:chromosome 5
Location:2138904
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g236950 SRH11 (1 of 1) K14440 - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:3.6.4.12] (SMARCAL1, HARP); SNF2-related DNA/RNA helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGAGCCTTGCGCTCTACCGACTGAGCTAACCGGGCTGCTTTTGGGGATG
Internal bar code:CACAGATATATTTTTGGCTGCC

Confirmation - LEAP-Seq

LEAP-Seq distance:4181
LEAP-Seq percent confirming:76.4706
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTGCACAGTCATACAGCA
Suggested primer 2:GTCGGCGCCCAATTTGATAC