Gene: Cre05.g236950

Overview

Common name:SRH11
Defline:(1 of 1) K14440 - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:3.6.4.12] (SMARCAL1, HARP); SNF2-related DNA/RNA helicase
Description:SNF2-related helicase. ChromoDB CHR341; null-allele passenger mutation was isolated (PMID 29743196)
Synonyms:g5452.t1,SRH11
Chromosome:chromosome 5

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.020962_1 CLIP2.020962 intron 80 6.1
CLIP2.020962_2 CLIP2.020962 intron 80 6.1
CLIP2.021360_3 CLIP2.021360 intron 80 6.1
CLIP2.021360_4 CLIP2.021360 intron 80 6.1
CLIP2.023655_1 CLIP2.023655 intron 80 6.1
CLIP2.023655_2 CLIP2.023655 intron 80 6.1
CLIP2.024351_1 CLIP2.024351 intron 80 6.1
CLIP2.024351_2 CLIP2.024351 intron 80 6.1
CLIP2.035865_2 CLIP2.035865 intron 80 6.1
CLIP2.039056_1 CLIP2.039056 intron 80 6.1
CLIP2.039056_2 CLIP2.039056 intron 80 6.1
LMJ.RY0402.040388_1 LMJ.RY0402.040388 CDS 73 5.5
LMJ.RY0402.068719_1 LMJ.RY0402.068719 intron 73 5.5
LMJ.RY0402.078654_2 LMJ.RY0402.078654 3'UTR 73 5.5
LMJ.RY0402.078654_3 LMJ.RY0402.078654 3'UTR 73 5.5
LMJ.RY0402.084685_1 LMJ.RY0402.084685 intron 73 5.5
LMJ.RY0402.090103_1 LMJ.RY0402.090103 intron 73 5.5
LMJ.RY0402.138918_1 LMJ.RY0402.138918 intron 73 5.5
LMJ.RY0402.193355_1 LMJ.RY0402.193355 CDS 73 5.5
LMJ.RY0402.198186_1 LMJ.RY0402.198186 intron 95 5.5
LMJ.RY0402.198186_2 LMJ.RY0402.198186 intron 95 5.5
LMJ.RY0402.200697_1 LMJ.RY0402.200697 intron 73 5.5
LMJ.RY0402.202793_1 LMJ.RY0402.202793 intron 73 5.5

Gene Annotations

PFAM:PF00176, PF00271
PANTHER: PTHR10799 PTHR10799:SF584
KEGG_ec:EC:3.6.4.12
KEGG_orthology:K14440
KOG:KOG1000
Gene ontology terms::GO:0005524
Best arabidopsis TAIR name:AT1G48310
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:chromatin remodeling factor18
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Paromomycin, screen 3 of 6 ( 71% confidence (FDR = 0.29))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.