Insertion junction: CLIP2.036311_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.036311
Chromosome:chromosome 6
Location:8150515
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g305900 CPLD22,UAA4 Putative GDP-fucose transporter, conserved in the plant lineage and diatoms; (1 of 3) PTHR11132//PTHR11132:SF64 - SOLUTE CARRIER FAMILY 35 // SUBFAMILY NOT NAMED 3'UTR
Cre06.g305950 CSB32,TNP18 (1 of 70) PF07282 - Putative transposase DNA-binding domain (OrfB_Zn_ribbon); {"Probable transposon-derived protein of Chlamydomonas-Specific family B CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCTTCCGGCGGTGGCCCCCCGTACGCCCGCCCCCCTTGCGCCCGCCAC
Internal bar code:AGGGTGCCGTGTCAAGAGCCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1170
LEAP-Seq percent confirming:73.3333
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCTATGGCAGAGTGGGTA
Suggested primer 2:TCACGGAGCAGCTTGATGAG