Insertion junction: CLIP2.037721_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.037721
Chromosome:chromosome 6
Location:3103401
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g275350 ROC40 (1 of 1) PTHR12802//PTHR12802:SF43 - SWI/SNF COMPLEX-RELATED // PROTEIN CCA1-RELATED; Rhythm Of Chloroplast 40 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAAACCCAGTTGAAGATGTGCACTCACCGGGTCTCGGTGTTGGGCGGCT
Internal bar code:GTTGGGAACATAATGACAACCG

Confirmation - LEAP-Seq

LEAP-Seq distance:974
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGCACAAGAAGGTAGGCA
Suggested primer 2:CCGTTGTTTCCATTGCCCTG