Gene: Cre06.g275350

Overview

Common name:	ROC40
Defline:	(1 of 1) PTHR12802//PTHR12802:SF43 - SWI/SNF COMPLEX-RELATED // PROTEIN CCA1-RELATED; Rhythm Of Chloroplast 40
Description:	CCA1/LHY-like MYB protein, circadian clock associated transcription factor; Goncalves et al (2016) show that the mutant is impaired in lipid accumulation during N starvation
Synonyms:	g6174.t1,ROC40
Chromosome:	chromosome 6

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.022156_1	CLIP2.022156	intron	80	6.1
CLIP2.022156_2	CLIP2.022156	intron	80	6.1
CLIP2.028762_1	CLIP2.028762	intron	80	6.1
CLIP2.028762_2	CLIP2.028762	intron	80	6.1
CLIP2.037721_1	CLIP2.037721	intron	80	6.1
CLIP2.037721_2	CLIP2.037721	intron	80	6.1
CLIP2.037906_3	CLIP2.037906	3'UTR	63	6.1
CLIP2.043157_1	CLIP2.043157	CDS	80	6.1
CLIP2.043157_2	CLIP2.043157	CDS	80	6.1
CLIP2.044675_1	CLIP2.044675	CDS	80	6.1
CLIP2.044675_2	CLIP2.044675	CDS	80	6.1
CLIP2.059220_1	CLIP2.059220	intron	80	6.1
LMJ.RY0402.060029_1	LMJ.RY0402.060029	intron	73	5.5
LMJ.RY0402.063574_1	LMJ.RY0402.063574	3'UTR	73	5.5
LMJ.RY0402.071857_1	LMJ.RY0402.071857	3'UTR	73	5.5
LMJ.RY0402.126189_1	LMJ.RY0402.126189	3'UTR	73	5.5
LMJ.RY0402.130655_1	LMJ.RY0402.130655	CDS	95	5.5
LMJ.RY0402.130655_2	LMJ.RY0402.130655	CDS	95	5.5
LMJ.RY0402.141265_2	LMJ.RY0402.141265	3'UTR	95	5.5
LMJ.RY0402.141265_3	LMJ.RY0402.141265	3'UTR	95	5.5
LMJ.RY0402.146715_1	LMJ.RY0402.146715	intron	95	5.5
LMJ.RY0402.146715_2	LMJ.RY0402.146715	intron	95	5.5
LMJ.RY0402.156683_1	LMJ.RY0402.156683	CDS	73	5.5
LMJ.RY0402.165627_1	LMJ.RY0402.165627	3'UTR	95	5.5
LMJ.RY0402.165627_2	LMJ.RY0402.165627	3'UTR	95	5.5
LMJ.RY0402.178829_1	LMJ.RY0402.178829	3'UTR	58	5.5
LMJ.RY0402.182759_3	LMJ.RY0402.182759	intron	73	5.5
LMJ.RY0402.187311_1	LMJ.RY0402.187311	3'UTR	95	5.5
LMJ.RY0402.187311_2	LMJ.RY0402.187311	3'UTR	95	5.5
LMJ.RY0402.190417_2	LMJ.RY0402.190417	CDS	73	5.5
LMJ.RY0402.206523_1	LMJ.RY0402.206523	intron	95	5.5
LMJ.RY0402.206523_2	LMJ.RY0402.206523	intron	95	5.5
LMJ.RY0402.207184_1	LMJ.RY0402.207184	5'UTR	58	5.5
LMJ.RY0402.232024_1	LMJ.RY0402.232024	intron	73	5.5
LMJ.SG0182.010806_1	LMJ.SG0182.010806	CDS	75	5.3

Gene Annotations

PFAM:	PF00249
PANTHER:	PTHR12802 PTHR12802:SF43
KEGG_ec:
KEGG_orthology:	K12134
KOG:	KOG0048
Gene ontology terms::	GO:0003677, GO:0042309, GO:0050825, GO:0050826
Best arabidopsis TAIR name:	AT1G01060.1
Best arabidopsis TAIR symbol:	LHY,LHY1
Best arabidopsis TAIR defline:	Homeodomain-like superfamily protein
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.