Insertion junction: CLIP2.037906_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.037906
Chromosome:chromosome 6
Location:3108223
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre06.g275350 ROC40 (1 of 1) PTHR12802//PTHR12802:SF43 - SWI/SNF COMPLEX-RELATED // PROTEIN CCA1-RELATED; Rhythm Of Chloroplast 40 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTGGGTGTGCAGGGGTGTGTGAATAAGGGTGGATAGATTATGTGTACAA
Internal bar code:AACTATCAAGTAGGACCATCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:172
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:ACACCATACGGGGGAGATGA
Suggested primer 2:CGATTTCGCTATGGCCTCCT