Insertion junction: CLIP2.039299_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.039299
Chromosome:chromosome 10
Location:2971098
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g440300 SMC5A (1 of 2) PTHR19306//PTHR19306:SF1 - STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 // STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5; Structural Maintenance of Chromosomes protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTCAATCCGTATGTGCGCTGCTGTTGCTCTGTGTTGAAAGCAGGAGTGT
Internal bar code:CGACGAATAGACTTTTGCGCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2218
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:AGCGATTACTCGGGCTAACG
Suggested primer 2:TGGCACCGTACATGTGTTGA