Insertion junction: CLIP2.040108_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.040108
Chromosome:plastome
Location:110805
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802311 2716998,ChreCp047,rpoC2 RNA polymerase beta'' chain; (1 of 1) PTHR19376//PTHR19376:SF38 - DNA-DIRECTED RNA POLYMERASE // DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'' CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATGTTCTCCTCTTTAGAAATAGCACTATTAACATAAAGTAGATTAGATT
Internal bar code:TGAGCCAAAGCGCCACTCAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:1579
LEAP-Seq percent confirming:73.5294
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:TTGAGTTCTTTAACGCGCGC
Suggested primer 2:TGTAGCACTTTCCCTGCCTG