Insertion junction: CLIP2.040660_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.040660
Chromosome:chromosome 12
Location:1434314
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g488450 VSP3 (1 of 5) PTHR16631:SF9 - GLUCAN 1,3-BETA-GLUCOSIDASE; Hydroxyproline-rich cell wall glycoprotein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCATACTGCGCATGCGGCAAACGTGTAGTAGCGGCTGTCCTGTGGACAC
Internal bar code:TGGTCAGTTCATGATAGTATTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1245
LEAP-Seq percent confirming:59.0909
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:AACACCGCTCATGTCTTCGT
Suggested primer 2:GCGGCATTCTTACTTCGCTG