Gene: Cre12.g488450
Overview
| Common name: | VSP3 |
| Defline: | (1 of 5) PTHR16631:SF9 - GLUCAN 1,3-BETA-GLUCOSIDASE; Hydroxyproline-rich cell wall glycoprotein |
| Description: | Extracellular matrix protein (vegetative cell wall protein) similar to ISG (Volvox carteri) [PMID: 1600938], both are glycoproteins with a hydroxyproline-rich (HR) domain. [PMID: 8000007]; contains Glucan-b1,3-glucosidase domain |
| Synonyms: | g12216.t1,VSP3 |
| Chromosome: | chromosome 12 |
Protein Localization
A plasmid for expressing Cre12.g488450 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre12.g488450-Venus-3xFLAG
Imaged strain: CSI_LW12C4
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
secretory pathway/plasma membrane or cell wall
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.011708_1 | CLIP2.011708 | CDS | 80 | 6.1 |
| CLIP2.011708_2 | CLIP2.011708 | CDS | 80 | 6.1 |
| CLIP2.040660_1 | CLIP2.040660 | intron | 80 | 6.1 |
| CLIP2.040660_2 | CLIP2.040660 | intron | 80 | 6.1 |
| CLIP2.057194_1 | CLIP2.057194 | 3'UTR | 80 | 6.1 |
| CLIP2.074981_1 | CLIP2.074981 | 3'UTR | 40 | 6.1 |
| LMJ.RY0402.076426_2 | LMJ.RY0402.076426 | CDS | 95 | 5.5 |
| LMJ.RY0402.076426_3 | LMJ.RY0402.076426 | CDS | 95 | 5.5 |
| LMJ.RY0402.211051_1 | LMJ.RY0402.211051 | CDS | 95 | 5.5 |
| LMJ.RY0402.211051_2 | LMJ.RY0402.211051 | CDS | 95 | 5.5 |
Gene Annotations
| PFAM: | |
| PANTHER: | PTHR16631 PTHR16631:SF9 |
| KEGG_ec: | EC:2.7.11.18 |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.