Gene: Cre12.g488450 (Genome version: v5.5)
Overview
| Common name: | VSP3 |
| Defline: | Extracellular matrix protein |
| Description: | Extracellular matrix protein (vegetative cell wall protein) similar to ISG (Volvox carteri) [PMID: 1600938], both are glycoproteins with a hydroxyproline-rich (HR) domain. [PMID: 8000007. ISG Genbank entry X65165; VSP3, L29029; C. incerta ortholog, AY7950 |
| Synonyms: | g12216.t1,VSP3 |
| Chromosome: | chromosome_12 |
Protein Localization
A plasmid for expressing Cre12.g488450 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre12.g488450-Venus-3xFLAG
Imaged strain: CSI_LW12C4
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
secretory pathway/plasma membrane or cell wall
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Orientation | Insertion Junction Feature | Confidence (%) |
|---|---|---|---|---|
| LMJ.RY0402.076426_2 | LMJ.RY0402.076426 | sense | CDS | 95 |
| LMJ.RY0402.076426_3 | LMJ.RY0402.076426 | sense | CDS | 95 |
| LMJ.RY0402.211051_1 | LMJ.RY0402.211051 | sense | CDS | 95 |
| LMJ.RY0402.211051_2 | LMJ.RY0402.211051 | sense | CDS | 95 |
Gene Annotations
| PFAM: | |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.