Insertion junction: CLIP2.040712_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.040712
Chromosome:chromosome 6
Location:3336856
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g277801 DNL4,DNL7 DNA ligase; (1 of 2) K10777 - DNA ligase 4 (LIG4, DNL4) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCGAGTCGCTGCCGCCCGACCTGGCGGGAATGACACTGGGCGAGGTGC
Internal bar code:AATCTTATCTCCCTGACCTCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:438
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GGCAGCGAACGAGATTAGGA
Suggested primer 2:GTACTGTTGCGGTTGCTGTG