Insertion junction: CLIP2.041335_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.041335
Chromosome:chromosome 12
Location:8325112
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g550900 SSD3 Sterol sensing domain protein; (1 of 1) K12385 - Niemann-Pick C1 protein (NPC1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTCGCGGCAGCCGCCGCCGGCAGCCTCAGGGGCCCCGCCTCCTCCCGCC
Internal bar code:ACGCCTTGGCGGGAATGTCTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:235
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GTATAGCCCGAGGAAGCCAC
Suggested primer 2:GTCTGGGGGAAGAGTGTGTG