Gene: Cre12.g550900

Overview

Common name:SSD3
Defline:Sterol sensing domain protein; (1 of 1) K12385 - Niemann-Pick C1 protein (NPC1)
Description:sterol sensing domain protein similar to Arabidopsis protein and similar to Niemann-Pick disease protein
Synonyms:Cre12.g550900.t1.1,SSD3,g13527.t1
Chromosome:chromosome 12

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.031915_1 CLIP2.031915 intron 80 6.1
CLIP2.031915_2 CLIP2.031915 intron 80 6.1
CLIP2.035814_1 CLIP2.035814 CDS 80 6.1
CLIP2.035814_2 CLIP2.035814 CDS 80 6.1
CLIP2.037691_3 CLIP2.037691 intron 63 6.1
CLIP2.041335_1 CLIP2.041335 CDS 80 6.1
CLIP2.041335_2 CLIP2.041335 CDS 80 6.1
CLIP2.041845_1 CLIP2.041845 intron 80 6.1
CLIP2.041845_2 CLIP2.041845 intron 80 6.1
CLIP2.047539_1 CLIP2.047539 intron 80 6.1
CLIP2.047539_2 CLIP2.047539 intron 80 6.1
CLIP2.053666_1 CLIP2.053666 3'UTR 80 6.1
CLIP2.056447_2 CLIP2.056447 intron 63 6.1
LMJ.RY0402.043056_1 LMJ.RY0402.043056 intron 95 5.5
LMJ.RY0402.043056_2 LMJ.RY0402.043056 intron 95 5.5
LMJ.RY0402.098450_1 LMJ.RY0402.098450 intron 73 5.5
LMJ.RY0402.108795_1 LMJ.RY0402.108795 intron 95 5.5
LMJ.RY0402.108795_2 LMJ.RY0402.108795 intron 95 5.5
LMJ.RY0402.144166_1 LMJ.RY0402.144166 intron 95 5.5
LMJ.RY0402.144166_2 LMJ.RY0402.144166 intron 95 5.5
LMJ.RY0402.207945_1 LMJ.RY0402.207945 CDS 58 5.5
LMJ.RY0402.246014_1 LMJ.RY0402.246014 5'UTR 73 5.5
LMJ.RY0402.256638_1 LMJ.RY0402.256638 intron 95 5.5
LMJ.RY0402.256638_2 LMJ.RY0402.256638 intron 95 5.5
LMJ.SG0182.009027_1 LMJ.SG0182.009027 intron 75 5.3

Gene Annotations

PFAM:PF02460, PF12349, PF16414
PANTHER: PTHR10796 PTHR10796:SF116
KEGG_ec:
KEGG_orthology:K12385
KOG:KOG1933
Gene ontology terms::GO:0008158, GO:0016020, GO:0016021
Best arabidopsis TAIR name:AT4G38350
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:Patched family protein
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

LAT003D02, screen 1 of 1 ( 73% confidence (FDR = 0.27))
Mannitol, screen 1 of 1 ( 75% confidence (FDR = 0.25))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.