Insertion junction: CLIP2.042012_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.042012
Chromosome:chromosome 4
Location:2211860
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g220200 (1 of 1) PTHR16254:SF13 - K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCCTGCAACCCTTCGTCCGAACCCTAACCCCAAAACCCTAACCCCAAA
Internal bar code:GGTTACAGGGGTAGGTAGTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:759
LEAP-Seq percent confirming:57.8947
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:AGAGAGAGCGTGTGTGTGTG
Suggested primer 2:TCCACATGAACGGCTAACCC