Insertion junction: CLIP2.044009_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.044009
Chromosome:chromosome 14
Location:513806
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g611300 COP3,CHR1,CSOA (1 of 7) PF01036 - Bacteriorhodopsin-like protein (Bac_rhodopsin); Channelrhodopsin 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCATCTTTCTTTCCAAACAGGTATGGGTATGGGCATGGGCGGCGGCAT
Internal bar code:GAGTTGTAAGGACTTCCGTAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2052
LEAP-Seq percent confirming:9.09091
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CAAACCCTGCCGTCACAAAG
Suggested primer 2:GGGGGCTTGAACAGGAAAGA