Insertion junction: CLIP2.044570_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.044570
Chromosome:chromosome 10
Location:5895277
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g460750 (1 of 1) PF00429 - ENV polyprotein (coat polyprotein) (TLV_coat) intron
Cre10.g460800 (1 of 7) 2.7.11.1//2.7.11.17 - Non-specific serine/threonine protein kinase / Threonine-specific protein kinase // Calcium/calmodulin-dependent protein kinase / Microtubule-associated protein 2 kinase outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGGGCTCAGCCCAAAAAATGGGAACAGTGGGTGGTTGGCAGCACACCA
Internal bar code:GTTGCTGCGTTTGTATTGCTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2233
LEAP-Seq percent confirming:38.2353
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCCACATGCCTCCACAAT
Suggested primer 2:CCCTGCAGCAGTTGTTTGAC