Insertion junction: CLIP2.046524_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.046524
Chromosome:chromosome 12
Location:6984236
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g560900 CPLD35,AOF7 Flavin-containing amine oxidase. Conserved in plant lineage and Diatoms; (1 of 2) 1.3.5.5 - 15-cis-phytoene desaturase / Plant-type phytoene desaturase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGTAGATCTGGGGTAGACGGGTGGGGTAGACCTGGGGGAGACTACCGA
Internal bar code:TTTAAGTTTCATAAAGGCTCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:3271
LEAP-Seq percent confirming:96.5116
LEAP-Seq n confirming:83
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:86

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTGCAACCTGTACTTCCG
Suggested primer 2:ACTACCATAAGGAGGCCGGT