Insertion junction: CLIP2.048006_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.048006
Chromosome:chromosome 17
Location:3783546
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g726850 (1 of 3) K11089 - 60 kDa SS-A/Ro ribonucleoprotein (TROVE2, SSA2); Similar to Sjogren Syndrome Antigen A2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACAGCGGCCGCAGCGCCCTCCACCACCTTCCGGCGCTTGGCCGCGTGCT
Internal bar code:ACCTTTAAAGGTCGTGCACTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:160
LEAP-Seq percent confirming:3.22581
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:30
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:TTAGGGAATGGTGGGTGCAC
Suggested primer 2:TCAGCGACCTTAACAGCAGG