Insertion junction: CLIP2.049264_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.049264
Chromosome:chromosome 13
Location:1955503
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g576300 GSC1,APH1 (1 of 1) K06172 - anterior pharynx defective 1 (APH1); Gamma-secretase accessory subunit intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTGGCCGACAATCGGGACCTATTTCGTTGGGCGTGGGCATAGAACCCCC
Internal bar code:GCGGGGAAGTTCACGTTAATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1197
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGTCCCTCTCTCCTTCCA
Suggested primer 2:CGGTAAGCGAGGTCAGGATC