Insertion junction: CLIP2.050354_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.050354
Chromosome:chromosome 1
Location:5256250
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g036850 PDY1 (1 of 2) 1.5.5.2 - Proline dehydrogenase; Proline dehydrogenase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTCCCTCGCTCGCGCCTACCGCCCGGGCACTGGGCTCCGCAGGTGATCC
Internal bar code:ATAGCATTAATGTGGCAAGCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:739
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CCGCAGCCATGAACTATTGC
Suggested primer 2:GCATCAACCCCTGTCGGTAA