Insertion junction: CLIP2.050710_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.050710
Chromosome:chromosome 12
Location:886356
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g495955 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCTGCACGCTGGGCGGCATTTTTGGGGAACGACCAGCACGCATTGGCC
Internal bar code:GGCGAAGGGTGGGTGGGTCGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:6751
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:CGATTTATTTGCCCTGCCGG
Suggested primer 2:CTTCCACAACCGTGCAACAG