Insertion junction: CLIP2.051014_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.051014
Chromosome:chromosome 12
Location:3145948
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g500600 VMA21 (1 of 1) PF09446 - VMA21-like domain (VMA21); vacuolar ATPase assembly factor gene_edge/mRNA_edge/CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTTTAATCGTTCTTCTTTGCCTCCACCTTTGCCGTATCGTCCGTGGTCA
Internal bar code:GTCGGAGAGGACTCTCCTACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1388
LEAP-Seq percent confirming:64.2857
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:AATTTTGTTGGCGGTGAGGC
Suggested primer 2:GCAACCCGTAACCAACCAAC