Gene: Cre12.g500600
Overview
| Common name: | VMA21 |
| Defline: | (1 of 1) PF09446 - VMA21-like domain (VMA21); vacuolar ATPase assembly factor |
| Description: | VMA21 is localised in the ER where it is needed as an accessory factor for assembly of the V component of the vacuolar ATPase |
| Synonyms: | g12564.t1,Cre12.g500600.t1.1,VMA21 |
| Chromosome: | chromosome 12 |
Protein Localization
A plasmid for expressing Cre12.g500600 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre12.g500600-Venus-3xFLAG
Imaged strain: CSI_LW10E11
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
shapes in cytoplasm/uncategorized shapes in cytoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.012484_1 | CLIP2.012484 | CDS | 80 | 6.1 |
| CLIP2.012484_2 | CLIP2.012484 | CDS | 80 | 6.1 |
| CLIP2.024426_1 | CLIP2.024426 | CDS | 80 | 6.1 |
| CLIP2.024426_2 | CLIP2.024426 | CDS | 80 | 6.1 |
| CLIP2.045034_1 | CLIP2.045034 | CDS | 80 | 6.1 |
| CLIP2.045034_2 | CLIP2.045034 | CDS | 80 | 6.1 |
| CLIP2.051014_1 | CLIP2.051014 | gene_edge/mRNA_edge/CDS | 80 | 6.1 |
| CLIP2.051014_2 | CLIP2.051014 | gene_edge/mRNA_edge/CDS | 80 | 6.1 |
| CLIP2.054202_1 | CLIP2.054202 | CDS | 80 | 6.1 |
| CLIP2.054202_2 | CLIP2.054202 | CDS | 80 | 6.1 |
| LMJ.RY0402.116264_1 | LMJ.RY0402.116264 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.116264_2 | LMJ.RY0402.116264 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.133955_1 | LMJ.RY0402.133955 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.133955_2 | LMJ.RY0402.133955 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.180027_1 | LMJ.RY0402.180027 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.196062_1 | LMJ.RY0402.196062 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.218384_2 | LMJ.RY0402.218384 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.244342_1 | LMJ.RY0402.244342 | 3'UTR | 58 | 5.5 |
| LMJ.RY0402.244342_2 | LMJ.RY0402.244342 | 3'UTR | 73 | 5.5 |
Gene Annotations
| PFAM: | PF09446 |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | GO:0070072 |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.