Insertion junction: CLIP2.051029_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.051029
Chromosome:chromosome 11
Location:341563
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467575 CLPB4 (1 of 1) PF07728//PF10431//PF13191 - AAA domain (dynein-related subfamily) (AAA_5) // C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) // AAA ATPase domain (AAA_16); ClpB chaperone, Hsp100 family intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCACCGCGCGGGACCCGCCGCCGCCGCCGCGCCAAGCACGCAGTCAGCT
Internal bar code:TAGTTATTGTAACTTATGAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:208
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CTTCCCCTGATGCCACATGT
Suggested primer 2:ACGATACCTCTTGCAGCCAC