Insertion junction: CLIP2.053519_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.053519
Chromosome:plastome
Location:182865
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802330 orf2971,ftsH,ChreCp065,2716962 ATP-dependent zinc metalloprotease; (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATTTGCTTCTGGAAACGCAGATTGCATTATATTTGTTTTTTGTTGTGTA
Internal bar code:AGAATCGCGAGGTCCGTTTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1207
LEAP-Seq percent confirming:48.1481
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:TGGGACATTTGGGCCGATTT
Suggested primer 2:AAGGGGGTTCGAGCTTAACC