Insertion junction: CLIP2.053839_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.053839
Chromosome:chromosome 1
Location:3869352
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g025400 HYD3,HYDIN1 (1 of 1) K17570 - hydrocephalus-inducing protein (HYDIN); Hydrocephalus 3-Like Protein Hydin CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCGGTGGAGCCGCGCCAGGCGCACCTGGAACCGGGCGACAGCCTGACGG
Internal bar code:TAAAGGGCGCATGTTTCATCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:858
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TCTTGCGGCCCATGTTGTAT
Suggested primer 2:GTCGAATCCAGATCCCGGTC