Insertion junction: CLIP2.054445_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.054445
Chromosome:chromosome 13
Location:2252263
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g578451 TSL1 (1 of 2) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase; Leucyl-tRNA synthetase 5'UTR
Cre13.g578501 (1 of 1) IPR009060//IPR015940//IPR026741//IPR026937//IPR027417 - UBA-like // Ubiquitin-associated domain // Protein strawberry notch // Strawberry notch, helicase C domain // P-loop containing nucleoside triphosphate hydrolase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGTGCTCATGCTATGTGCAGAGTTTTGTTTTCTAGGCAAAACGGGGCCC
Internal bar code:ACTATGAGTTTAATATCAGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:994
LEAP-Seq percent confirming:58.8235
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:ACTTGGCCTCAATCTCCGTG
Suggested primer 2:GCCCCTCTTCTTTCCTTCCC