Insertion junction: CLIP2.054835_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.054835
Chromosome:chromosome 1
Location:794447
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g004350 ROC105,ROC77,ALIX,NAT3,HLM1 (1 of 1) K12200 - programmed cell death 6-interacting protein (PDCD6IP, ALIX, RIM20); Histone-lysine N-methyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGGGGTACGCGCACCTAACCCCTCCACCTGCCGCCGGCCGCCGGCCAT
Internal bar code:ACGGCATCACTCTTTTTGTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1863
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGACGGGGTTTTGTTTGC
Suggested primer 2:AACATCCGGCAAACAACAGC