Insertion junction: CLIP2.055410_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.055410
Chromosome:chromosome 11
Location:4221375
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g481750 GAS30 (1 of 24) IPR003882//IPR024616 - Pistil-specific extensin-like protein // Pherophorin; Hydroxyproline-rich glycoprotein, stress-induced intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGGAAAGTGCACCTGGCAGGCCCCGTTGCTCCAGCCAAAATGCTTGTTA
Internal bar code:GTCTGAGATTGGGGTGGGGCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:577
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:TAGTCTCTGGCATCCGTCCA
Suggested primer 2:CAGTTCAGTTGTGTGGCTGC